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1.
Asian Pacific Journal of Tropical Biomedicine ; (12): 16-21, 2014.
Article in Chinese | WPRIM | ID: wpr-672429

ABSTRACT

Metagenomics research has been developed over the past decade to elucidate the genomes of the uncultured microorganisms with an aim of understanding microbial ecology. On the other hand, it has also been provoked by the increasing biotechnological demands for novel enzymes, antibiotic and signal mimics. The gut microbiota of insects plays crucial roles in the growth, development and environmental adaptation to the host insects. Very recently, the insect microbiota and their genomes (microbiome), isolated from insects were recognized as a major genetic resources for bio-processing industry. Consequently, the exploitation of insect gut microbiome using metagenomic approaches will enable us to find novel biocatalysts and to develop innovative strategies for identifying smart molecules for biotechnological applications. In this review, we discuss the critical footstep in extraction and purification of metagenomic DNA from insect gut, construction of metagenomic libraries and screening procedure for novel gene identification. Recent innovations and potential applications in bioprocess industries are highlighted.

2.
Indian J Exp Biol ; 2013 Nov; 51(11): 1024-1031
Article in English | IMSEAR | ID: sea-149413

ABSTRACT

A new antagonistic bacterial strain PGPR2 was isolated from the mungbean rhizosphere and documented for the production of hydrolytic enzymes with antifungal activity. Based on the phylogenetic analysis of the 16S rRNA gene sequence and phenotyping, this strain was identified as Pseudomonas aeruginosa. Maximum protease activity (235 U/mL) was obtained at 24 h of fermentation. The protease was purified to homogeneity in three steps: ammonium sulphate precipitation, anion exchange chromatography on DEAE- cellulose resin and gel filtration chromatography using P6 column. The purified enzyme had a molecular weight of ~33 kDa. The purified protease exhibited maximum activity at pH 6.0 and retained 80% of activity in a pH range of 5.0 - 9.0. Proteolytic activity was maximum in a temperature range of 40–70 °C. However, the enzyme was stable at 40 °C for 60 min. Among the metals tested, Mg2+ enhanced the protease activity. Internal amino acid sequence of the protease obtained by MALDI -ToF and subsequent Mascot database search showed maximum similarity to the HtpX protease of P. aeruginosa strain PA7. Thus, by virtue of its early production time, thermostability and effective antifungal ability, the protease purified and characterized from P. aeruginosa PGPR2 has several potential applications as fungicidal agents in agriculture.


Subject(s)
Ascomycota/drug effects , Chromatography, Liquid , Electrophoresis, Polyacrylamide Gel , Enzyme Stability , Peptide Hydrolases/isolation & purification , Peptide Hydrolases/metabolism , Peptide Hydrolases/pharmacology , Proteolysis , Pseudomonas aeruginosa/enzymology , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
3.
Indian J Exp Biol ; 2013 Nov; 51(11): 973-978
Article in English | IMSEAR | ID: sea-149405

ABSTRACT

Mercury is a highly toxic heavy metal accumulated in the environment, which can be detoxified by reducing Hg2+ to non toxic form. Bacteria resistant to toxic metals and capable of converting them into non toxic forms have a direct application in the bioremediation of contaminated sites. In this study, mercury resistant strain Bacillus cereus MRS-1 was isolated from electroplating industrial effluent. This strain exhibited the ability to convert mercury into extracellular sulphide nanoparticles of mercury. The recovered HgS nanoparticles have been characterized by UV-VIS spectrophotometer, FT-IR, atomic force microscopy, transmission electron microscopy, scanning electron microscopy, energy dispersive X-ray analysis, powder X-ray diffraction pattern and thermogravimetric analysis. The synthesized nanoparticles were spherical with a size range of 10–100 nm. This strain can be potentially exploited for the production of HgS nanoparticles as well as for detoxification of mercury in the environment without producing secondary pollution of mercury methylation or Hg (0) volatilization.

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